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The solution structure of a cyclic endothelin antagonist, BQ‐123, based on 1H–1H and 13H–1H three bond oupling constants
[摘要]

A cyclic pentapeptide endothelin antagonist, cyclo(dTrp-dAsp-Pro-dVal-Leu), recently reported (K. Ishikawa et al., 13th Am. Pept. Symp., Cambridge MA, 1991) has been studied by NMR spectroscopy and molecular modeling. A stable structure has been determined without the use of nuclear Overhauser effects and is based primarily on homonuclear and heteronuclear three bond coupling constants. The 13C-edited TOCSY experiment is demonstrated at natural abundance and ∼30 mM peptide concentrations. Three bond 13C–1H coupling constants obtained by this method are shown to reduce the ambiguity in φ angle determination which exists when only interproton coupling constants are used. Three out of four φ angles were determined uniquely by this method and the fourth was reduced to two possible values. The proline φ angle was determined to be −78° based on the 3 J HzHα and 3 J HzHβ coupling constants. Comparison of amide proton temperature dependence, chemical shifts and vicinal proton coupling constants in a 20% acetonitrile/80% water solvent mixture and in (CD3)2SO indicates that the structure is similar in both solvents.

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[效力级别]  [学科分类] 生物化学/生物物理
[关键词] Endothelin antagonist;Solution structure;Heteronuclear coupling constant;Cyclic peptide;ROESY;rotating frame nuclear Overhauser spectroscopy;TOCSY;total correlated spectroscopy;FMOC;fluorenylmethyloxycarbonyl;DCC;1;3-dicyclohexylcarbodiamide;HOBT;1-hydroxybenzotriazole hydrate;TFA;trifluoroacetic acid [时效性] 
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