Peach-Grape system - a high performance simulator for biomolecules

[摘要] References(52)A high performance system for the molecular dynamics simulation of biological molecules was constructed by combining a software package, Peach, with a special-purpose computer, Grape. The resultant simulator "Peach-Grape system" was used to analyze several important biological molecules including the Hin/DNA complex, the trp-Repressor/DNA complex, and Calmodulin. In addition to those simulations performed by the Peach-Grape system, other simulation studies of biomolecules by special-purpose computers are briefly reviewed.

[学科分类] 生物化学/生物物理

[关键词] MD;分子動力学;simulation;シミュレーション;Peach;Grape;protein;タンパク質;DNA